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Strengthening FAIRer Earth and Environmental Systems Science Data with Community-led Reporting Formats3 min read

by Lauren Nicole Core on November 14, 2022

Climate and Ecosystem Sciences Division

Earth and environmental systems science (ESS) research is evidence-based and relies on the analysis and modeling of diverse and multi-scale datasets. The volume of ESS data has risen sharply in recent years, with more data gathered by the minute. This may come as positive news—however, much of this data remains unarchived, difficult to access, and even unusable. Among other challenges, many scientists lack the resources and ability to archive and share their data using consistent methods. The Earth science community has moved toward adopting Findable, Accessible, Interoperable, and Reusable (FAIR) data principles to solve this problem.

A new paper authored by the Earth and Environmental Systems Science for a Virtual Ecosystem (ESS-DIVE) team seeks to address these issues and presents 11 novel reporting formats for organizing and describing various types of Earth science data in public databases. Published in Scientific Data, the ready-to-use formats are available in the ESS-DIVE data repository, as well as on ESS-DIVE’s community GitHub space. ESS-DIVE provides a centralized location to store and share open and standardized datasets to enhance scientific collaboration and data reuse.

“This publication is the result of a dedicated and collaborative effort across six U.S. DOE national labs, and a testament to the value of computational and Earth science researchers partnering for positive impact,” said Charuleka Varadharajan, a Scientist in the Earth and Environmental Sciences Area at Berkeley Lab, and lead of its Earth AI and Data program. “These reporting formats come at a time when they are urgently needed to enable our ability to extract insights from complex environmental systems data.” 

A community effort for a FAIRer future 

Supported by the U.S. Department of Energy (DOE) Office of Science Biological and Environmental Program, ESS-DIVE brought together teams of scientists across the DOE National Lab Network with the aim of helping researchers within its ESS community provide more standardized and well-described data. Together, they identified and created instructions and templates for formatting diverse environmental data types. The community-centered process involved reviewing over 100 existing data standards, conventions, or other reporting formats—and receiving input from 247 scientists representing 100+ institutions.

“A highlight of the reporting format development process was monthly meetings that convened many of the scientists leading the reporting format development process,” says Robert Crystal-Ornelas. “During these working sessions, we could harmonize on key terminology relevant across reporting formats, and share successes and challenges with the broader reporting format group.”

Covering data types commonly used by DOE, some of the reporting formats are intended to standardize commonly used descriptions about the data, referred to as “metadata,” such as information about the dataset locations and samples from where the data were generated. Others provide instructions for formatting and describing data files such as the comma-separated value (CSV) format or guidelines for organizing model data.  The other reporting formats are more domain-specific and focused on data types of importance to ESS research such as leaf-level gas exchange, soil respiration, water and sediment chemistry, hydrologic monitoring, and microbial amplicon abundances. 

Crystal-Ornelas also stated that the scale of the outreach and input received on the reporting formats underscores how big a need there was for this type of standardization within Earth and environmental sciences. He’s excited to see the formats used by researchers around the world, including inputs from across and outside of the National Lab Network. 

Shreyas Cholia, Group Leader for the Integrated Data Systems Group (Scientific Data Division) at Berkeley Lab, said: “ESS-DIVE is designed as a scalable framework that allows data providers to contribute standardized, structured, and high-quality data. The reporting formats are a vitally important contribution that supports long-term data stewardship. reproducible research, and data standardization across the community.”

This collaborative approach paves the way for future innovation around FAIRer data and may serve as a model for other organizations that would like to develop community (meta)data reporting formats for other types of data.

News & Events

Study Sheds Light on Microbial Communities in Earth’s Subsurface2 min read

August 16, 2023

  From the tops of tree canopies to the bottom of groundwater reservoirs, a vast amount of living organisms interact with nonliving components such as rock, water, and soil to shape this area of Earth known as the “critical zone.” Over half of Earth’s microbes are located in the subsurface critical zone, which ranges from…

Carl Steefel Honored in Goldschmidt Session on Reactive Transport2 min read

August 2, 2023

The contributions of Carl Steefel to the reactive transport modeling scientific community were recognized in a session held in his honor at the recent Goldschmidt 2023 conference (Lyon, France). Goldschmidt is the foremost annual, international conference on geochemistry and related subjects, organized by the European Association of Geochemistry and the Geochemical Society. The session was…

DOE Funds Projects to Advance Forest Carbon Dioxide Removal Efforts and Agricultural Soil Carbon Conservation4 min read

August 1, 2023

The DOE Office of Fossil Energy and Carbon Management (FECM) and Office of Technology Transitions (OTT) recently announced $5 million in funding for four projects–two from Berkeley Lab with EESA leadership. The projects selected offer “promising solutions” to the nation’s climate change challenges by helping to reduce greenhouse gas emissions and will “accelerate their deployment…

Quantifying the strength of the land carbon sink3 min read

July 26, 2023

This article first appeared at nature.berkeley.edu/news. The world’s forests, grasslands, and other terrestrial ecosystems have played a substantial role in offsetting human carbon emissions—a capability that UC Berkeley researchers say would be threatened by continued global change. The assessment, published today as a new review paper in Nature Reviews Earth & Environment, presents a comprehensive analysis of…

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